CDS

Accession Number TCMCG017C25184
gbkey CDS
Protein Id OMO72380.1
Location complement(join(14193..15065,15388..15538,15768..17632,18325..18852))
GeneID InterPro:IPR007855
Organism Corchorus olitorius
locus_tag COLO4_27641

Protein

Length 1138aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01019654.1
Definition RNA-dependent RNA polymerase, eukaryotic-type [Corchorus olitorius]
Locus_tag COLO4_27641

EGGNOG-MAPPER Annotation

COG_category A
Description Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K11699        [VIEW IN KEGG]
EC 2.7.7.48        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0001101        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009615        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009751        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010025        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010166        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042493        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046677        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060147        [VIEW IN EMBL-EBI]
GO:0060148        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060968        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901568        [VIEW IN EMBL-EBI]
GO:1901570        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGCAAGACAATTAAGCTCTTTGGGTTTGCTTCTGCTGTATCTCAAGAAGAAGTGATAGAGTTTCTAGAGGAATATACAGGGAAAGGAACCATTGAGGCTGTAGAAGTTGGGCAGTCTAAAAGGGAAGGCTCAAGAGCTCATGCCAAAGTTCAATTCAAAACCGAAGAAGATGCTAAAAGAATCTTGTCCTGGACTGCTGATCAAGCACTGTGGCACAAGAGTTCTTATCTGAAAGCATGGACTCTGAACCATGACATTATCCCACAACCAAAGTCACAATCATTCAATCTGCAAAGCATAGACAATTTGATGTTGCACATTGGATGTCAGGTTTCGAGGGAAAAGTTTTATGTCCTCTGGAAACATGGTGATGTCTCCATGAAGTTTGGCTTGAAACTGGACAGATTATACTTTTTTCTAACGTATAATTCTGTAGATTACAAGCTTGAGTTGTTCGACGACAATGTTTGGCAGATTATGCTGCATTATCCCCTCGATCAAACTAAGAAGTTCCTTATTATTCAGTTACTTGGGGCTCCTCGGATTTATGAGAAAGATGTATCTATTCCCATCTCTTCTAAGGAAGTTCCAGATGATGATCAGTGGATCAGGGAAGTTGATTTTACTCCAGGCAATTGCATTGGTCAATCTTTTGGTTTATGTCTAGAGCTTCCTCGAGGAGTTAAACTCCCAAAATTTGATCAGAATTTTTATTATAAGAAAGTTGAAGACAAATTCTCTCTGGAGAAGGGTTCTATCTTTTCTTCCAACCCTGTTCTTGTCCCTATAATAGTTCCACCTCAAGGTTTTGACTTGCCCTATAGTATCTTGTTCAAAGTGAATTCCTTGGTCCAACATGGTTGTCTTCCTGTGCCAACTCTTGATGCCAATTTCTTTAAATTGATTGATCCAAGTAGAATCAATAGTGCTTTCATAGAACATGCATTAGAGAAGCTGTATAGCTTCAGAGAATGTTGCTATGAACCTGTGAAGTGGCTAGATGAGCAGTATAAGAAATACCGTGAGTCAGAAAAGCCTCCTAGACCTCTTGCTGTCGTCTTTGATAATGGATTAGTTACCATTAGAAGGGCTCAGGTGACCCCATCTAAGGTGTACTTTAGTGGTCCAGAGGTGAATCTTTCAAATCGTGTGCTGCGTAATTACATTAACCACATTGATAATTTTCTTCGTGTTTCTTTTGTTGATGAGGAACTTGGGAAGATACGCTCAACAGATTTGTCTTCAAGCACATCTGTTACGAGTGATGGAAAGCGCACTAAAATTTATGATAGGATATTATCAACTCTTAAAAATGGTTTAGTCATTGGTGATAAGAAATTTGAGTTTCTTGCTTGTTCAACAAGTCAGTTACGAGAGAACTCCATTTGGATGTTTGCTTCAAAACCTGGACTTACTGCAGTGGATATCAGAGAGAAAATGGGTCATATTCATGTCATTAGGAATGTGGCAAAATATGCTGCCAGATTAGGTCAGTCTCTAAGTTCATCTCGGGAAACTTTAGAAGTGAAGATGAATGAAATTAAAATCATTCCTGACATTGATGGTGGAACTAAGTACAATTTCTCTGATGGCATTGGGAAAATATCTGCAAAACTTGCTAAGGCAGTGGCTGGGAAATGTGGTTTGAGAACTTACACTCCATCAGCATTTCAAATTCGGTATGGTGGTTACAAAGGAGTTGTAGCTGTTGATCCAACATCTTCAGTAAAGTTGTCATTGAGAAAGAGTATGCAGAAGTTTGATGCAGATAGTACTAGTCTTGATGTTTTATCATGGAGCAAAAAGCACCCTTGTTATCTTAATCGCCAAATAATCATCCTTTTGTCTACTCTTGGGGTTGAAGATATTGTTTTCGAAAAGAAGCAGAAAGAAGTTACAAGTCAATTGGATGCAATTTTGATGGATCCGGAAAGAGCAAAGGAGGCAATGGAGTGGATATCTCATGGAGAAATTACCAATGTTCTAAGAGAAATGCTTATGTGTGGTTACAACCCGGATTCAGAACCATTTCTGTCAATGATGCTACGGACAATTCGTGCATCAAAATTGCTGGATTTGAGGACCAAAACAAGGATTTTTGTCGAAAATGGAAGATCTATGATGGGATGTCTAGATGAAACTGGGACATTAGAGTATGGCCAGGTGTTTTTGCAGTGCTCTGGCCTCAAACCAAGGCAATTCTCTGATGACTCCCTCTTGACATTCAGTGATGGTAGGGTAAATAAAAATTGCCATGTTGTTGAAGGGACGGTTGTTGTTGCCAAAAACCCTTGTTTACACCCTGGAGACATACGAGTTCTGAAGGCTGTCAATGCCGTTGTTCTGCATCACATGGTGGATTGCATTGTTTTTCCACAAAAAGGCCACAGACCTCATCCAAATGAATGCTCGGGTAGTGATCTGGATGGCGATATGTACTTTGTTTCTTGGGATGAAGATCTCATTCCTCCCTGCCGATTTCCACCCATGGACTATGATCCAGCAGCAAGTACTCATTTGGATCATGATGTAACCATAGAGGAGGTTGCGGAGTATTTTACCAACTACATACTCAATGACAGCTTGGGAATCATTTCTAATGCCCACACAGTGTTCGCTGATAAAGAGCCAACTAAGGCATTGAGTGAGGAATGCATTGAGCTTGCCAAGTTATCATCCATTGCAGTTGACTTCCCCAAAACTGGTATTCCTGCAAAGATACCCCATCGTCTTCGCGTCCAACAATATCCAGATTTCATGGAAAAGCCTGATAAGTTCACTTATGAATCACAAAGTGTGATCGGAAAGCTTTACCGTGAGGTGAAAGCAATAGCAACAGGGGTGAGTGATGCAAAGCATTTCACCATGGAAGTAGCAGAGCAATCCTATGACTTTGACATGGAAGTTGATGGCTTCTTGGCTTATGTCAATGATGCTTTCCATTACAAAAGTGTGTATGATAACAAACTTGCCAACCTGATGCGTTATTATGGGGTCAAAACTGAGGCTGAAATGATGAGTGGATGCATCATGAAAATGTCGAAATCTTTCGACAGAAGAAGAGACTTGGAAACAGTTGTTCTAGCTGTGAAATCATTGAGGAAAGAAGCTAGAGGCTGGTTTTATGAGAAAGGAGATGATGATGAGTTAGAATATTCTAACGTTGTCGGTGGCAATGTACTGGCAAAAGCTTCAGCTTGGTATCATGTAACATACCATCCAAACTTCTGGGGTTTCTACAATGATACAACTGATCAAGAGCATTTCATCAGCTTCCCATGGTGTATCTATGACAAACTAATCCAAATTAAGAAGGAAAACAGTAGCAAAAAGTCTTCATTTGAAGGTCAAGCCAATAGAGGTGATAGGCAGCATCAGAAAACTAGTTGGTGGGATCTTTGTTCTCTTATGTGA
Protein:  
MGKTIKLFGFASAVSQEEVIEFLEEYTGKGTIEAVEVGQSKREGSRAHAKVQFKTEEDAKRILSWTADQALWHKSSYLKAWTLNHDIIPQPKSQSFNLQSIDNLMLHIGCQVSREKFYVLWKHGDVSMKFGLKLDRLYFFLTYNSVDYKLELFDDNVWQIMLHYPLDQTKKFLIIQLLGAPRIYEKDVSIPISSKEVPDDDQWIREVDFTPGNCIGQSFGLCLELPRGVKLPKFDQNFYYKKVEDKFSLEKGSIFSSNPVLVPIIVPPQGFDLPYSILFKVNSLVQHGCLPVPTLDANFFKLIDPSRINSAFIEHALEKLYSFRECCYEPVKWLDEQYKKYRESEKPPRPLAVVFDNGLVTIRRAQVTPSKVYFSGPEVNLSNRVLRNYINHIDNFLRVSFVDEELGKIRSTDLSSSTSVTSDGKRTKIYDRILSTLKNGLVIGDKKFEFLACSTSQLRENSIWMFASKPGLTAVDIREKMGHIHVIRNVAKYAARLGQSLSSSRETLEVKMNEIKIIPDIDGGTKYNFSDGIGKISAKLAKAVAGKCGLRTYTPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMQKFDADSTSLDVLSWSKKHPCYLNRQIIILLSTLGVEDIVFEKKQKEVTSQLDAILMDPERAKEAMEWISHGEITNVLREMLMCGYNPDSEPFLSMMLRTIRASKLLDLRTKTRIFVENGRSMMGCLDETGTLEYGQVFLQCSGLKPRQFSDDSLLTFSDGRVNKNCHVVEGTVVVAKNPCLHPGDIRVLKAVNAVVLHHMVDCIVFPQKGHRPHPNECSGSDLDGDMYFVSWDEDLIPPCRFPPMDYDPAASTHLDHDVTIEEVAEYFTNYILNDSLGIISNAHTVFADKEPTKALSEECIELAKLSSIAVDFPKTGIPAKIPHRLRVQQYPDFMEKPDKFTYESQSVIGKLYREVKAIATGVSDAKHFTMEVAEQSYDFDMEVDGFLAYVNDAFHYKSVYDNKLANLMRYYGVKTEAEMMSGCIMKMSKSFDRRRDLETVVLAVKSLRKEARGWFYEKGDDDELEYSNVVGGNVLAKASAWYHVTYHPNFWGFYNDTTDQEHFISFPWCIYDKLIQIKKENSSKKSSFEGQANRGDRQHQKTSWWDLCSLM